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Bioinfomatics & Genome editing

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2019
Nov 16

How to find sgRNA target sequences using CRISPRdirect

Nov 15

How to find sgRNA target sequences using CHOPCHOP

Nov 11

How to analyze CRISPR-Cas9 sample using CRISPResso in Anaconda environment

Nov 7

How to analyze CRISPR-Cas9 NGS sample using Cas-Analyzer

Nov 7

How to analyze CRISPR-Cas9 sample using CrispRVariants

Categories

  • Basic bioinformatics
  • Installation
  • NGS Analysis
  • indel prediction
  • knock-in design
  • others
  • sgRNA design

Tags

  • Anaconda
  • BWA-MEM
  • Bioinformatics
  • CHOPCHOP
  • CRISPOR
  • CRISPRdirect
  • CRISPResso
  • Cas-Analyzer
  • CrispRVariants
  • FLASh
  • GGGenome
  • GTagHD
  • Microhomology-Predictor
  • NCBI
  • RStudio
  • SRA
  • Sickle
  • Trimmomatic
  • UCSC genome browser
  • report

Tag Cloud

Anaconda BWA-MEM Bioinformatics CHOPCHOP CRISPOR CRISPRdirect CRISPResso Cas-Analyzer CrispRVariants FLASh GGGenome GTagHD Microhomology-Predictor NCBI RStudio SRA Sickle Trimmomatic UCSC genome browser report

Archives

  • January 2020
  • December 2019
  • November 2019
  • October 2019

Recent Posts

  • How to predict microhomology using Microhomology-Predictor
  • How to design knock-in donor using GTagHD
  • How to find sgRNA target sequences using CRISPOR
  • How to obtain gene information of hg19 from NCBI
  • How to find sgRNA target sequences using CRISPRdirect
© 2020 Kazuki Nakamae
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